19 Nonprofit Accounting Software Tools To Solve Your Bookkeeping Woes

Website & Technology August 03, 2018

Kate Hawkes

By Kate Hawkes

“It’s just impossible to keep track of everything,” my friend Sophie told me over coffee a few weeks ago.

She’d just started a new job as the administrator of a growing nonprofit organization, and although she had been working hard to stay on top of the financial and administrative work, she was feeling completely snowed under. Her organization just didn’t have the right tools to get it all done, she told me.

Her nonprofit’s current finance system was so confusing that Sophie was terrified of making errors, and it took hours to do even routine tasks. It involved tracking payments in Excel, then creating multiple reports from scratch, and constant switching between different systems to manage donations, invoices, and payroll. The process meant that some entries were duplicated, others were missed entirely, and often she’d have to start over from scratch.

Sophie and I sat down and Googled all the accounting softwares tailored to nonprofits. Within the afternoon, we discovered an easy and inexpensive option that suited her needs perfectly. When we met up again the next week, she was beaming. The software had cut the hours she spent tracking finances into minutes — and the best part was that she was able to set up everything herself.

If you’re looking for a nonprofit accounting software solution, look no further. I’ve rounded up all the most popular options into this list. I’ve also highlighted the major benefits of each one and given advice on the kind of nonprofit they might suit best.

What is Nonprofit Accounting Software?

Nonprofit accounting software helps organizations manage financial administrative work, such as incoming and outgoing payments, budgeting and reports. Unlike general accounting software that focuses on the amount of profit made, these programs are designed to handle project-focused accounting. Many also include tools for accepting donations, planning and reporting for specific grants, and presenting figures in a transparent way to donors and board members.

These platforms allow organizations to manage many elements of their finances in one place, and even automate some recurring tasks, reducing the chance of errors and duplication, and saving valuable hours each week.


20,000 Small Nonprofits Use This Super Simple Accounting Solution

If you’re a small or mid-sized nonprofit and don’t need complicated financial tracking, you may benefit from using an all-in-one membership management software solution. This can simplify your inbound cash flow by accepting donations, event ticket payments, store purchases and subscriptions all from a central membership platform, saving you time when it comes to keeping on top of your accounts.

WildApricot’s membership management software accepts online payments, generates invoices, and records amounts received, in addition to providing a range of other tools including a website builder, email marketing and event registration. WildApricot even has an inbuilt online payment processor, WildApricot Payments (powered by AffiniPay), as well as integrating with other services including PayPal and Authorize.net.

You can learn more about membership management options in this blog post.


Top Nonprofit Accounting Software

This guide brings together the top accounting software solutions that many nonprofits use, listed in alphabetical order. There are options for organizations of all sizes and budgets, and each has a unique set of features, so take a few minutes to read through and see which might suit your nonprofit best.

Once you’ve created your shortlist, I recommend you sign up for the demos and free trials of any that offer them, and get in touch with the companies to find out more details, as well as any deals they might have on pricing. Before you decide, ask yourself these questions to decide which is the right software for you:

  1. Is the system easy to learn? Is there support available?
  2. How quickly do you need the software to be set up?
  3. What specialized features will you need?
  4. Do you need integration with other systems?
  5. How secure is the system?

If you’re unfamiliar with accounting terms and lingo, I’ve also included a glossary of some of the finance and software terms that come up frequently in this list. To view it, just scroll down to the bottom of this page or follow this link.

With this information at your fingertips, you’ll be ready to choose a software solution that will help you set up quicker, more accurate finance procedures, and free you up to focus on your nonprofit’s mission.

Mobile finance post banner

1. Abila MIP Fund Accounting

  • Great for: Growing nonprofits looking for a solution to grow with them
  • Cost: Contact for a quote
  • Trial: N/A
  • Demo: Register here to schedule a demo

Abila software is scalable, customizable, and has offerings for both small and large organizations. It offers both on-premise and cloud-based options, and even has a mobile app to enable access on the go. Standard features include a general ledger, accounts payable, and budgeting functions, and optional extras include payroll, human resources, and multi-currency functionality. With 25 modules you can choose from, Abila lets you build a solution that suits your nonprofit.

2. AccountEdge Pro

  • Great for: Desktop accounting
  • Cost: $399 one time fee (currently discounted to $349)
  • Demo: N/A
  • Trial: Sign up here for a free 30 day trial

AccountEdge Pro is a desktop accounting solution for small businesses, with an optional cloud app for more flexible access. It allows you to manage banking, credit card and expense accounts, and set up recurring transactions that include a reminder to record them. It has a comprehensive payroll system with a setup assistant that walks you through getting started, and an option to add on a payroll tax module for an additional fee. AccountEdge will also send a free copy of the software to your accountant to make sure you’re on the same page.

3. Accufund

  • Great for: Government agencies
  • Cost: Contact for a quote
  • Demo: N/A
  • Trial: N/A

AccuFund is geared specifically towards nonprofits and government agencies, and has industry experts available to help support the service. The software is available as either an on-premise or cloud-based solution, and there are a range of add-on modules including payroll and grants management, making this a fairly flexible solution. Core features include accounts payable, budgeting, bank reconciliation, cash receipts, and a financial report writer.

4. Adaptive Insights

  • Great for: Planning and forecasting
  • Cost: Contact for a quote
  • Demo: Register here to watch a free demo
  • Trial: Sign up here for a free trial

Adaptive Insights is an analytics and financial planning software that can help your nonprofit with budgeting, planning and forecasting. Self-service reporting allows you to include dimensions such as project, location, or fund, and the interactive dashboards make it easy to track KPIs. Accurately plan revenues and expenses, model different scenarios and incorporate contingency planning to help allocate resources and budget for your nonprofit’s future.


5. Aplos

  • Great for: Small nonprofits looking for an easy-to-use platform
  • Cost: Starts from $25/month, paid annually
  • Demo: Register here to watch a free demo
  • Trial: Sign up here for a free 15 day trial

Aplos is an online solution for small to medium-sized nonprofits and churches that prides itself on being straightforward to use. All plans include customizable donations pages, fund accounting, reporting and budgeting, but the Standard plan also includes donations and special gift tracking, and the Advanced plan tops this up with fundraising and Form 990 reporting too.


6. Araize

  • Great for: Small to medium nonprofits with multiple programs
  • Cost: Starts from $42 a month for FastFund Accounting 
  • Demo: Register here for a demo
  • Trial: Sign up here for a  free trial
FastFund Online is the only cloud solution that seamlessly integrates nonprofit accounting, fundraising and payroll in one system.  Designed by CPAs, FastFund Accounting features true fund accounting and functional accounting, allowing you to report on funds, programs, grants and projects. FastFund is an affordable, modular system allows you to quickly get up and running and includes free support by a staff of CPAs and accountants that understand the unique fiscal challenges of nonprofits.

7. Argenta Software

  • Great for: Simplifying your to-do list
  • Cost: Starts from $149/month
  • Demo: Register here to schedule a free demo
  • Trial: Sign up here for a free 14 day trial

Argenta by Devscape focuses on integrating and automating daily tasks, saving you time to spend on the things that really matter. There are even built-in checklists and project management tools to help you keep on top of everything, and real-time campaign analytics that let you track your successes as you go. Donations, expenses and invoices can be added to the fund accounting system with the touch of a button, and the cloud-based system ensures your data is accessible whenever and wherever you need it.

8. Blackbaud

  • Great for: Large nonprofits with multiple departments
  • Cost: Contact for a quote
  • Demo: Register here to schedule a free demo
  • Trial: N/A

Blackbaud has a large range of nonprofit solutions, including their accounting software, Financial Edge NXT. Their Nonprofit General Ledger structure enables reporting by project, grant, department, or any characteristic that suits your organization, and you can also create multiple “what if” budget scenarios to measure the impact of potential change. Financial Edge NXT is suited to larger nonprofits with complex accounting needs — it’s designed to work with other Blackbaud products such as Raiser’s Edge, and offers control tools to ensure compliance and prevent fraud.

9. Breeze + QuickBooks

  • Great for: Church-based nonprofits
  • Cost: QuickBooks starts from $20/month. Breeze has a single price of $50/month
  • Demo: Register here to watch a demo of Breeze
  • Trial: Sign up here for a free 30 day trial of QuickBooks

Breeze is a web-based church management software option. With Breeze, you can store and search data on members, communicate with groups, schedule events and track donations. The data from donations and contributions can then be imported directly to your Quickbooks account, with all the usual features on this platform. Breeze make the software really straightforward to join: they have one price, with full access and support included, and they will even import all your data for you at no extra cost.

10. Denali

  • Great for: Internal security
  • Cost: Contact for a quote
  • Trial: Contact for a free trial
  • Demo: Register here to schedule a demo

Denali Fund is made for small to medium sized nonprofits with multiple funds, and can either be an on-premises or a cloud-based accounting solution. Denali’s fund accounting software emphasizes security — their uncompromising internal controls allow nonprofits to maintain oversight of staff and define role-based access for each user. Denali allows for both unlimited and restricted funds, and gives you the ability to create custom reports.


11. File990

  • Great for: Associations and organizations of any size with single or multiple chapters

  • Cost: $39.95/filing for 990-N; $49.95/filing for 990EZ

  • Trial: N/A

  • Demo: Register here to schedule a 15 or 30-minute webinar


File990 makes filing your nonprofit’s taxes easier with their comprehensive filing software. Users answer a few simple questions and File990 does the rest. As an authorized e-filer with the IRS, File990 will submit your tax returns fast and securely, and will make the process as simple as possible! For larger organizations, File990 helps you stay organized with their enterprise option by providing real-time updates when your individual chapters have filed and even sends out reminders as tax season is approaching so you don’t miss deadlines!

12. Fund E-Z

  • Great for: Larger nonprofits looking for a secure system
  • Cost: Contact for a quote. Starts from $200 for cloud software, and $2,000 for locally installed
  • Demo: Contact for a demo
  • Trial: Sign up here for a 30 day free trial

FUND E-Z is a fund accounting software solution that has been established for 20 years, and enables you to create and track budgets for multiple projects and funding sources. Fund E-Z is ideal for large nonprofits and nonprofits with complex accounting needs. The interface makes large volumes of data easy to sort, filter and export, and you can grant user rights by function, hiding sensitive data as required. Automatic backups, crash protection, and audit features that track modifications of data keep your data secure and keep you in control.

13. Nonprofit Plus

  • Great for: Large nonprofits looking for extra services
  • Cost: Contact for a quote
  • Trial: N/A
  • Demo: Register here to schedule a demo

Nonprofit Plus uses the Acumatica finance suite to offer a range of functions. As well as fund accounting, through Nonprofit Plus you can also manage your board, volunteers, donors, grants and budgets. Nonprofit Plus works with a range of industries, and offers additional services including software development, project management and consulting. This is a comprehensive solution, designed for enterprise-level nonprofits.

14. QuickBooks Premier Nonprofit

  • Great for: Connecting to other programs
  • Cost: QuickBooks starts from $20/month. Desktop premier has a one-time fee of $349.95
  • Trial: N/A
  • Demo: N/A

QuickBooks is one of the best-known accounting software solutions, and the Desktop Premier package adds industry-specific features, allowing existing QuickBooks Premier nonprofit users to also manage grants, donors, and programs. You can create custom reports for each fund or project, accept donations and stay IRS-compliant. QuickBooks integrates with many other programs, so you can build a customized solution that suits your organization. Keep in mind, because it is a locally installed software, it does not allow for the flexibility of accessing it anywhere that a cloud-based system offers.

15. Sage Intacct

  • Great for: Integrating with Salesforce
  • Cost: Contact for a quote
  • Trial: Sign up here for a 30 day free trial
  • Demo: Register here to watch a demo

Sage Intacct has an open API structure, meaning that it allows the accounting system to integrate with other business applications like your CRM or payroll, including Salesforce. As well as a general ledger and accounts payable, Sage also has purchasing, cash management, and reporting and dashboard as core features, and you can add additional modules such as contract billing and project accounting to customize the platform.

16. SparkRock

  • Great for: School boards
  • Cost: Contact for a quote. Pricing starts from $2170/month
  • Trial: N/A
  • Demo: Register here to schedule a demo

SparkRock is made for large nonprofits with a generous budget seeking fund and grants accounting, alongside accounts payable, accounts receivable, and budgeting. Additionally, it has products that provide workforce management and K-12 school board management, so it’s particularly well placed to work for schools. Because it’s built on the Microsoft platform, it works seamlessly with Skype and Office 365 applications. Sparkrock really stands out with their support: as well as unlimited access to the support desk, they host a user conference, have a selection of training videos and a team of expert consultants.

17. Traverse NFP

  • Great for: Nonprofit-specific tasks
  • Cost: Contact for a quote
  • Demo: Register here to schedule a demo
  • Trial: N/A

Traverse NFP focuses on requirements specific to nonprofits, including being able to handle international project and currencies, donor rosters and varying reporting periods, and aims to free up your time to concentrate on your mission. You can export reports to MS Office applications with just a few clicks, making them easily shareable with board members. Traverse gives access to general ledger, accounts payable, and payroll applications, and has the fund accounting features frequently requested by nonprofit organizations.

18. WildApricot + QuickBooks

  • Great for: An all-in-one cloud-based solution
  • Cost: QuickBooks starts from $20/month. WildApricot starts from $48/month.
  • Trial: Sign up here for a free 30 day trial
  • Demo: Register for a trial and you’ll receive links to videos and webinars that show WildApricot in action.

WildApricot is a complete membership management software solution for small and medium sized nonprofits. Over 3,800 nonprofits save up to 20 hours each week by automating admin tasks such as email communications, membership renewals, event registrations and online payments. WildApricot integrates with QuickBooks, a robust accounting software that handles invoices, receipts, bank reconciliation, bill payments and expense tracking, so you can seamlessly manage your nonprofit’s finances.

19. Zoho Books + Nonprofit Add-Ons

  • Great for: Easy access to your dashboard
  • Cost: Starts from $120/year plus free nonprofit add-ons
  • Trial: Sign up here for free 14 day trial
  • Demo: N/A

Zoho Books is online accounting software for small businesses, with features that manage expenses, track inventory, create invoices and generate reports. It’s cloud-based, and you can access the dashboard from your iOS, Android or Windows device. Zoho isn’t specifically for nonprofits, but it does offers two nonprofit modules: Donor Management and Volunteer Portal. These free add-ons allow you to keep a database of donors, and send notifications to volunteers when you create events near them.

Hopefully this list has helped you start building your accounting software shortlist — there’s something here to suit every nonprofit. Good luck with your search!


Glossary of Accounting Terms

This is just a quick guide to terms used in this list — you can find a more complete glossary on the NYSSCPA or Accounting Coach websites.

Accounts payable — The money your nonprofit owes other companies.

Account receivable — The money your nonprofit is owed by other companies.

Bank reconciliation — A statement that identifies the differences between the balance shown on your bank statement, and the balance shown in your records.

Cloud—based software — Software or services available via the Internet.

CRM (Customer Relationship Management software) — Technology used to manage interactions with customers.

Dashboards — A financial reporting tool that shows summaries of key data trends.

Forecasting — Projecting future trends based on past data

Form 990 — A form that the Internal Revenue Service of the United States requires many tax-exempt organizations to complete.

Fund accounting — A system of accounting that tracks finances according to a particular project or purpose.

General ledger — The master set of accounting records for your nonprofit.

Grants management — The tasks required to handle the financial, reporting, and program requirements of a grant according to the satisfaction of the body funding the grant.

Inbound cash flow — Money that your nonprofit receives through transactions.

KPIs (Key Performance Indicator) — Measurable factors used to track success.

Locally installed software — Software that can only be used on specific computers that have had the program installed.

On-premises software — Same as above.

Restricted funds — Money that can only be used in a specified way.


Related Resources:

The Membership Growth Report:

Benchmarks & Insights for Growing Revenue and Constituents

Get the report now!

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